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B Fwd: PLoS Computational Biology Volume 7(11) November 2011

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From: "PLoS Computational Biology" <news@lists.plos.org>
Date: Nov 19, 2011 6:27 PM
Subject: PLoS Computational Biology Volume 7(11) November 2011
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PLoS Computational Biology Volume 7(11) November 2011 View Table of Contents on web site

Perspective PLoS Computational Biology Conference Postcards from ISMB/ECCB 2011 Pedro Madrigal, Noa Sela, Simon M. Lin Review The What and Where of Adding Channel Noise to the Hodgkin-Huxley Equations Joshua H. Goldwyn, Eric Shea-Brown Research Articles Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein Robust Signal Processing in Living Cells Ralf Steuer, Steffen Waldherr, Victor Sourjik, Markus Kollmann Significance of Input Correlations in Striatal Function Man Yi Yim, Ad Aertsen, Arvind Kumar Speed, Sensitivity, and Bistability in Auto-activating Signaling Circuits Rutger Hermsen, David W. Erickson, Terence Hwa Virus Replication Strategies and the Critical CTL Numbers Required for the Control of Infection Andrew J. Yates, Minus Van Baalen, Rustom Antia Gene Expression Divergence is Coupled to Evolution of DNA Structure in Coding Regions Zhiming Dai, Xianhua Dai Optimizing Experimental Design for Comparing Models of Brain Function Jean Daunizeau, Kerstin Preuschoff, Karl Friston, Klaas Stephan Sparse Gamma Rhythms Arising through Clustering in Adapting Neuronal Networks Zachary P. Kilpatrick, Bard Ermentrout Collective Animal Behavior from Bayesian Estimation and Probability Matching Alfonso Pérez-Escudero, Gonzalo G. de Polavieja Genome Majority Vote Improves Gene Predictions Michael E. Wall, Sindhu Raghavan, Judith D. Cohn, John Dunbar Replication Pauses of the Wild-Type and Mutant Mitochondrial DNA Polymerase Gamma: A Simulation Study Zhuo Song, Yang Cao, David C. Samuels Deciphering the Arginine-Binding Preferences at the Substrate-Binding Groove of Ser/Thr Kinases by Computational Surface Mapping Avraham Ben-Shimon, Masha Y. Niv Phosphorylation of the Arp2 Subunit Relieves Auto-inhibitory Interactions for Arp2/3 Complex Activation Arjun Narayanan, Lawrence L. LeClaire III, Diane L. Barber, Matthew P. Jacobson Identification of Biochemical Network Modules Based on Shortest Retroactive Distances Gautham Vivek Sridharan, Soha Hassoun, Kyongbum Lee Computational Modeling and Analysis of Insulin Induced Eukaryotic Translation Initiation Joshua Lequieu, Anirikh Chakrabarti, Satyaprakash Nayak, Jeffrey D. Varner Stochastic Delay Accelerates Signaling in Gene Networks Krešimir Josić, José Manuel López, William Ott, LieJune Shiau, Matthew R. Bennett Representational Switching by Dynamical Reorganization of Attractor Structure in a Network Model of the Prefrontal Cortex Yuichi Katori, Kazuhiro Sakamoto, Naohiro Saito, Jun Tanji, Hajime Mushiake, Kazuyuki Aihara Dynamical and Structural Analysis of a T Cell Survival Network Identifies Novel Candidate Therapeutic Targets for Large Granular Lymphocyte Leukemia Assieh Saadatpour, Rui-Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, István Albert, Réka Albert A Density-Dependent Switch Drives Stochastic Clustering and Polarization of Signaling Molecules Alexandra Jilkine, Sigurd B. Angenent, Lani F. Wu, Steven J. Altschuler Reversible and Noisy Progression towards a Commitment Point Enables Adaptable and Reliable Cellular Decision-Making Anna Kuchina, Lorena Espinar, Jordi Garcia-Ojalvo, Gürol M. Süel Neural Dynamics as Sampling: A Model for Stochastic Computation in Recurrent Networks of Spiking Neurons Lars Buesing, Johannes Bill, Bernhard Nessler, Wolfgang Maass Transcriptomic Coordination in the Human Metabolic Network Reveals Links between n-3 Fat Intake, Adipose Tissue Gene Expression and Metabolic Health Melissa J. Morine, Audrey C. Tierney, Ben van Ommen, Hannelore Daniel, Sinead Toomey, Ingrid M. F. Gjelstad, Isobel C. Gormley, Pablo Pérez-Martinez, Christian A. Drevon, Jose López-Miranda, Helen M. Roche How Landscape Heterogeneity Frames Optimal Diffusivity in Searching Processes E. P. Raposo, F. Bartumeus, M. G. E. da Luz, P. J. Ribeiro-Neto, T. A. Souza, G. M. Viswanathan High Degree of Heterogeneity in Alzheimer's Disease Progression Patterns Natalia L. Komarova, Craig J. Thalhauser Learning the Optimal Control of Coordinated Eye and Head Movements Sohrab Saeb, Cornelius Weber, Jochen Triesch The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing Paul M. Magwene, John H. Willis, John K. Kelly Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy Seyed Yahya Anvar, Allan Tucker, Veronica Vinciotti, Andrea Venema, Gert-Jan B. van Ommen, Silvere M. van der Maarel, Vered Raz, Peter A. C. 't Hoen Stability Properties of Underdominance in Finite Subdivided Populations Philipp M. Altrock, Arne Traulsen, Floyd A. Reed Trade-Offs and Constraints in Allosteric Sensing Bruno M.C. Martins, Peter S. Swain All works published in PLoS journals are open access, distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Copyright is retained by the author. 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